PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00117.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 136aa    MW: 15891.4 Da    PI: 9.3293
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00117.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.1e-201970256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             +++GVr+++ +g+++AeIrdps ng  +r +lg+f tae+Aa+a+++a+ +l+g+
  Rsa1.0_00117.1_g00006.1 19 RFRGVRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEDAARAYDRAAYNLRGH 70
                             69*******.**********98887..**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.55E-171878No hitNo description
SuperFamilySSF541712.68E-231978IPR016177DNA-binding domain
SMARTSM003802.1E-351983IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-311979IPR001471AP2/ERF domain
PfamPF008476.3E-141970IPR001471AP2/ERF domain
PROSITE profilePS5103224.4471977IPR001471AP2/ERF domain
PRINTSPR003676.3E-112031IPR001471AP2/ERF domain
PRINTSPR003676.3E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MEGTNRRSNN QIQDDKQARF RGVRRRPWGK FAAEIRDPSR NGARLWLGTF ETAEDAARAY  60
DRAAYNLRGH LAILNFPNEY YSRMDDYSLR PPYSSSSSGS TSTGVSRQNQ REVFEFEYLD  120
DKVLQELLDS EERNKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-291677263ATERF1
3gcc_A3e-291677263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256081e-104AB025608.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15.
GenBankAJ5803771e-104AJ580377.1 Arabidopsis thaliana mRNA for putative ethylene responsive element binding protein.
GenBankCP0026861e-104CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010512193.15e-79PREDICTED: ethylene-responsive transcription factor ERF098
SwissprotQ9LTC56e-73ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0D3ABA94e-78A0A0D3ABA9_BRAOL; Uncharacterized protein
STRINGBra023748.1-P2e-71(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-61ERF family protein